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WormBase Tree Display for CDS: SRAE_2000191300

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Name Class

SRAE_2000191300SMapS_parentSequenceSRAE_chr2
StructureSource_exons1634
7691859
DB_infoDatabaseUniProtUniProtAccA0A090MYI6
UniProtIdA0A090MYI6_STRRB
DB_remarkcontains similarity to Pfam domain PF00402 (Calponin family repeat); contains similarity to Interpro domain IPR000557 (Calponin repeat)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00262120
Corresponding_transcriptSRAE_2000191300.1
Corresponding_proteinSRP11418
Matching_cDNABG893737Inferred_automaticallytranscript_builder.pl
FC811664Inferred_automaticallytranscript_builder.pl
FC810989Inferred_automaticallytranscript_builder.pl
FC817232Inferred_automaticallytranscript_builder.pl
BI323553Inferred_automaticallytranscript_builder.pl
FC810821Inferred_automaticallytranscript_builder.pl
Brief_identificationCalponin repeat-containing protein
RNASeq_FPKMWBls:0000677234.627From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
235.421From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
304.348From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
309.909From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
310.985From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
315.204From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
WBls:000067860.6593From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
63.7279From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
66.2836From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
67.3433From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
71.5908From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
82.2021From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
82.87From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
92.1197From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
WBls:0000680106.765From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:000068220.0767From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated