WormBase Tree Display for CDS: R17.2
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| R17.2 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | R17 | |||
| Structure | Source_exons | 1 | 87 | |||
| 144 | 359 | |||||
| 414 | 925 | |||||
| 1576 | 1677 | |||||
| 2351 | 3023 | |||||
| 3995 | 4169 | |||||
| 4742 | 4863 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | O18005 | ||
| UniProt | UniProtAcc | O18005 | ||||
| AlphaFold | entry | O18005 | ||||
| UniProt_GCRP | UniProtAcc | O18005 | ||||
| NCBI_protein | GI_number | GI:3879187 | ||||
| TREEFAM | TREEFAM_ID | TF323175 | ||||
| Protein_id | CHROMOSOME_III | CAB07271 | 1 | |||
| DB_remark | PDE-12 protein; contains similarity to Pfam domain PF03372 (Endonuclease/Exonuclease/phosphatase family); contains similarity to Interpro domains IPR050410 (CCR4/nocturin mRNA turnover and transcription), IPR005135 (Endonuclease/exonuclease/phosphatase), IPR036691 (Endonuclease/exonuclease/phosphatase superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00011268 | ||||
| Corresponding_transcript | R17.2.1 | |||||
| Corresponding_protein | CE16315 | |||||
| Corresponding_PCR_product | TH:324H11 | |||||
| cenix:324-h11 | ||||||
| mv_R17.2 | ||||||
| sjj_R17.2 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA (43) | ||||||
| RNAi_result | WBRNAi00006334 | |||||
| WBRNAi00034952 | ||||||
| WBRNAi00052003 | ||||||
| WBRNAi00017887 | ||||||
| WBRNAi00001720 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Endonuclease/exonuclease/phosphatase domain-containing protein | Accession_evidence | UniProt | TR:O18005 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
