WormBase Tree Display for CDS: PPA38599
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PPA38599 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 132 | |||
178 | 265 | |||||
313 | 435 | |||||
490 | 572 | |||||
716 | 812 | |||||
873 | 1039 | |||||
1860 | 1985 | |||||
2084 | 2293 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S230-0.11 | ||
DB_remark | contains similarity to Pfam domain PF00320 (GATA zinc finger); contains similarity to Interpro domains IPR039355 (Transcription factor GATA), IPR000679 (Zinc finger, GATA-type), IPR013088 (Zinc finger, NHR/GATA-type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00276968 | ||||
Corresponding_transcript | PPA38599.1 | |||||
Corresponding_protein | PP58463 | |||||
Corresponding_oligo_set | GPL14372_Probes_38713 | |||||
GPL14372_Probes_38715 | ||||||
Microarray_results | GPL14372_Probes_38713 | |||||
GPL14372_Probes_38715 | ||||||
RNASeq_FPKM | WBls:0000032 | 7.84467 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 9.26584 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |