WormBase Tree Display for CDS: PPA28209
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PPA28209 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (41) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S10-76.28 | ||
DB_remark | PPA-UNC-54 protein; contains similarity to Pfam domains PF00063 (Myosin head (motor domain)), PF01576 (Myosin tail), PF02736 (Myosin N-terminal SH3-like domain); contains similarity to Interpro domains IPR004009 (Myosin, N-terminal, SH3-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR002928 (Myosin tail), IPR027401 (), IPR008989 (Myosin S1 fragment, N-terminal), IPR036961 (Kinesin motor domain superfamily), IPR001609 (Myosin head, motor domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00117763 | ||||
Corresponding_transcript | PPA28209.1 | |||||
Corresponding_protein | PP65746 | |||||
Corresponding_oligo_set | GPL14372_Probes_12539 | |||||
GPL14372_Probes_58914 | ||||||
GPL14372_Probes_58916 | ||||||
Matching_cDNA | FE939379 | Inferred_automatically | transcript_builder.pl | |||
FE931691 | Inferred_automatically | transcript_builder.pl | ||||
AW097572 | Inferred_automatically | transcript_builder.pl | ||||
AW097001 | Inferred_automatically | transcript_builder.pl | ||||
AW052325 | Inferred_automatically | transcript_builder.pl | ||||
FE931993 | Inferred_automatically | transcript_builder.pl | ||||
AI986550 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_12539 | |||||
GPL14372_Probes_58914 | ||||||
GPL14372_Probes_58916 | ||||||
RNASeq_FPKM | WBls:0000032 | 4.86452 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 7.65936 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S10-76.28 | Curator_confirmed | WBPerson4055 | |||
Method | curated |