WormBase Tree Display for CDS: PPA20517
expand all nodes | collapse all nodes | view schema
PPA20517 | SMap | S_parent | Sequence | PPA_ChrX | ||
---|---|---|---|---|---|---|
Structure | Source_exons (16) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2845-5.59 | ||
DB_remark | PPA-UNC-3 protein; contains similarity to Pfam domains PF01833 (IPT/TIG domain), PF16422 (Transcription factor COE1 DNA-binding domain), PF16423 (Transcription factor COE1 helix-loop-helix domain); contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR002909 (IPT domain), IPR038173 (Transcription factor COE, DNA-binding domain superfamily), IPR032200 (Transcription factor COE, DNA-binding domain), IPR013783 (Immunoglobulin-like fold), IPR032201 (Transcription factor COE, helix-loop-helix domain), IPR036638 (Helix-loop-helix DNA-binding domain superfamily), IPR003523 (Transcription factor COE) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00110071 | ||||
Corresponding_transcript | PPA20517.1 | |||||
Corresponding_protein | PP65864 | |||||
Corresponding_oligo_set | GPL14372_Probes_22160 | |||||
GPL14372_Probes_22162 | ||||||
GPL14372_Probes_22163 | ||||||
GPL14372_Probes_74722 | ||||||
GPL14372_Probes_74724 | ||||||
GPL14372_Probes_74725 | ||||||
Microarray_results | GPL14372_Probes_22160 | |||||
GPL14372_Probes_22162 | ||||||
GPL14372_Probes_22163 | ||||||
GPL14372_Probes_74722 | ||||||
GPL14372_Probes_74724 | ||||||
GPL14372_Probes_74725 | ||||||
RNASeq_FPKM | WBls:0000032 | 4.64569 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 5.48674 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2845-5.59 | Curator_confirmed | WBPerson4055 | |||
Method | curated |