WormBase Tree Display for CDS: PPA19924
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PPA19924 | SMap | S_parent | Sequence | PPA_ChrIII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (30) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S66-2.70 | ||
DB_remark | PPA-UNC-71 protein; contains similarity to Pfam domains PF00200 (Disintegrin), PF01421 (Reprolysin (M12B) family zinc metalloprotease), PF01562 (Reprolysin family propeptide), PF08516 (ADAM cysteine-rich); contains similarity to Interpro domains IPR024079 (Metallopeptidase, catalytic domain superfamily), IPR036436 (Disintegrin domain superfamily), IPR002870 (Peptidase M12B, propeptide), IPR006586 (ADAM, cysteine-rich domain), IPR001762 (Disintegrin domain), IPR001590 (Peptidase M12B, ADAM/reprolysin) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00109478 | ||||
Corresponding_transcript | PPA19924.1 | |||||
Corresponding_protein | PP60585 | |||||
Corresponding_oligo_set | GPL14372_Probes_17209 | |||||
GPL14372_Probes_17210 | ||||||
GPL14372_Probes_17211 | ||||||
GPL14372_Probes_17212 | ||||||
GPL14372_Probes_17213 | ||||||
GPL14372_Probes_17215 | ||||||
Matching_cDNA | BI500136 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_17209 | |||||
GPL14372_Probes_17210 | ||||||
GPL14372_Probes_17211 | ||||||
GPL14372_Probes_17212 | ||||||
GPL14372_Probes_17213 | ||||||
GPL14372_Probes_17215 | ||||||
RNASeq_FPKM | WBls:0000032 | 5.45116 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 18.0251 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S66-2.70 | Curator_confirmed | WBPerson4055 | |||
Method | curated |