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WormBase Tree Display for CDS: PPA19924

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Name Class

PPA19924SMapS_parentSequencePPA_ChrIII
StructureSource_exons (30)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S66-2.70
DB_remarkPPA-UNC-71 protein; contains similarity to Pfam domains PF00200 (Disintegrin), PF01421 (Reprolysin (M12B) family zinc metalloprotease), PF01562 (Reprolysin family propeptide), PF08516 (ADAM cysteine-rich); contains similarity to Interpro domains IPR024079 (Metallopeptidase, catalytic domain superfamily), IPR036436 (Disintegrin domain superfamily), IPR002870 (Peptidase M12B, propeptide), IPR006586 (ADAM, cysteine-rich domain), IPR001762 (Disintegrin domain), IPR001590 (Peptidase M12B, ADAM/reprolysin)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00109478
Corresponding_transcriptPPA19924.1
Corresponding_proteinPP60585
Corresponding_oligo_setGPL14372_Probes_17209
GPL14372_Probes_17210
GPL14372_Probes_17211
GPL14372_Probes_17212
GPL14372_Probes_17213
GPL14372_Probes_17215
Matching_cDNABI500136Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_17209
GPL14372_Probes_17210
GPL14372_Probes_17211
GPL14372_Probes_17212
GPL14372_Probes_17213
GPL14372_Probes_17215
RNASeq_FPKMWBls:00000325.45116From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010118.0251From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S66-2.70Curator_confirmedWBPerson4055
Methodcurated