WormBase Tree Display for CDS: PPA18726
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PPA18726 | SMap | S_parent | Sequence | PPA_ChrX | ||
---|---|---|---|---|---|---|
Structure | Source_exons (14) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S293-2.18 | ||
TREEFAM | TREEFAM_ID | TF318042 | ||||
DB_remark | PPA-UNC-115 protein; contains similarity to Pfam domains PF00412 (LIM domain), PF02209 (Villin headpiece domain); contains similarity to Interpro domains IPR003128 (Villin headpiece), IPR001781 (Zinc finger, LIM-type), IPR036886 (Villin headpiece domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00108280 | ||||
Corresponding_transcript | PPA18726.1 | |||||
Corresponding_protein | PP54458 | |||||
Corresponding_oligo_set | GPL14372_Probes_22937 | |||||
GPL14372_Probes_22938 | ||||||
GPL14372_Probes_22939 | ||||||
GPL14372_Probes_22940 | ||||||
GPL14372_Probes_34732 | ||||||
GPL14372_Probes_34733 | ||||||
Microarray_results | GPL14372_Probes_22937 | |||||
GPL14372_Probes_22938 | ||||||
GPL14372_Probes_22939 | ||||||
GPL14372_Probes_22940 | ||||||
GPL14372_Probes_34732 | ||||||
GPL14372_Probes_34733 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S293-2.18 | Curator_confirmed | WBPerson4055 | |||
Method | curated |