WormBase Tree Display for CDS: PPA16200
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PPA16200 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (76) | |||||
DB_info | Database (2) | |||||
DB_remark | PPA-NMY-2 protein; contains similarity to Pfam domains PF00063 (Myosin head (motor domain)), PF01576 (Myosin tail); contains similarity to Interpro domains IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR002928 (Myosin tail), IPR027401 (), IPR008989 (Myosin S1 fragment, N-terminal), IPR036961 (Kinesin motor domain superfamily), IPR001609 (Myosin head, motor domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00105754 | ||||
Corresponding_transcript | PPA16200.1 | |||||
Corresponding_protein | PP58915 | |||||
Corresponding_oligo_set | GPL14372_Probes_79435 | |||||
GPL14372_Probes_79436 | ||||||
GPL14372_Probes_79437 | ||||||
Matching_cDNA | AW052377 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_79435 | |||||
GPL14372_Probes_79436 | ||||||
GPL14372_Probes_79437 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S273-10.48 | Curator_confirmed | WBPerson4055 | |||
Method | curated |