Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: PPA16200

expand all nodes | collapse all nodes | view schema

Name Class

PPA16200SMapS_parentSequencePPA_ChrII
StructureSource_exons (76)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S273-10.48
TREEFAMTREEFAM_IDTF333601
DB_remarkPPA-NMY-2 protein; contains similarity to Pfam domains PF00063 (Myosin head (motor domain)), PF01576 (Myosin tail); contains similarity to Interpro domains IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR002928 (Myosin tail), IPR027401 (), IPR008989 (Myosin S1 fragment, N-terminal), IPR036961 (Kinesin motor domain superfamily), IPR001609 (Myosin head, motor domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00105754
Corresponding_transcriptPPA16200.1
Corresponding_proteinPP58915
Corresponding_oligo_set (3)
Matching_cDNAAW052377Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_79435
GPL14372_Probes_79436
GPL14372_Probes_79437
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S273-10.48Curator_confirmedWBPerson4055
Methodcurated