WormBase Tree Display for CDS: PPA06400
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| PPA06400 | SMap | S_parent | Sequence | PPA_ChrIV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (47) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S212-2.26 | ||
| TREEFAM | TREEFAM_ID | TF351263 | ||||
| DB_remark | PPA-UNC-44 protein; contains similarity to Pfam domains PF00023 (Ankyrin repeat), PF00531 (Death domain), PF00791 (ZU5 domain), PF12796 (Ankyrin repeats (3 copies)), PF13637 (Ankyrin repeats (many copies)), PF13857 (Ankyrin repeats (many copies)), PF17809 (UPA domain); contains similarity to Interpro domains IPR011029 (Death-like domain superfamily), IPR002110 (Ankyrin repeat), IPR040745 (Ankyrin, UPA domain), IPR000488 (Death domain), IPR020683 (Domain of unknown function DUF3447), IPR000906 (ZU5 domain), IPR036770 (Ankyrin repeat-containing domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00095954 | ||||
| Corresponding_transcript | PPA06400.1 | |||||
| Corresponding_protein | PP67231 | |||||
| Corresponding_oligo_set (12) | ||||||
| Matching_cDNA | FE932617 | Inferred_automatically | transcript_builder.pl | |||
| FE940192 | Inferred_automatically | transcript_builder.pl | ||||
| AI986695 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results (12) | ||||||
| RNASeq_FPKM | WBls:0000032 | 4.42157 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 4.52513 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S212-2.26 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
