WormBase Tree Display for CDS: PPA03427
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| PPA03427 | SMap | S_parent | Sequence | PPA_ChrX | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (16) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S328-2.26 | ||
| DB_remark | PPA-ACR-9 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR002394 (Nicotinic acetylcholine receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00092981 | ||||
| Corresponding_transcript | PPA03427.1 | |||||
| Corresponding_protein | PP66944 | |||||
| Corresponding_oligo_set | GPL14372_Probes_65320 | |||||
| GPL14372_Probes_65321 | ||||||
| Microarray_results | GPL14372_Probes_65320 | |||||
| GPL14372_Probes_65321 | ||||||
| RNASeq_FPKM | WBls:0000032 | 4.64569 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S328-2.26 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
