WormBase Tree Display for CDS: OVOC7902b
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OVOC7902b | Evidence | From_analysis | RNASeq | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM3_51 | |||
Structure | Source_exons (12) | |||||
DB_info | DB_remark | contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006028 (Gamma-aminobutyric acid A receptor/Glycine receptor alpha), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Isoform | Curator_confirmed | WBPerson28994 | ||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00244711 | ||||
Corresponding_transcript | OVOC7902b.1 | |||||
Corresponding_protein | OVP14746 | |||||
Brief_identification | Gamma-aminobutyric acid receptor subunit beta homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 1.3e-05 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 3e-06 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
8e-06 | From_analysis (2) | |||||
WBls:0000664 | 1.6e-05 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
6e-06 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Remark | [150721 jl16] Added isoform based on RNASeq. | Curator_confirmed | WBPerson28994 | |||
Method | curated |