WormBase Tree Display for CDS: OVOC6342
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OVOC6342 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM2_99 | |||
Structure | Source_exons | 1 | 131 | |||
916 | 1074 | |||||
1369 | 1460 | |||||
1796 | 1946 | |||||
2287 | 2426 | |||||
2643 | 2819 | |||||
2921 | 2982 | |||||
3183 | 3316 | |||||
4009 | 4135 | |||||
DB_info | DB_remark | OVO-PRX-6 protein; contains similarity to Pfam domains PF00019 (Transforming growth factor beta like domain), PF00688 (TGF-beta propeptide); contains similarity to Interpro domains IPR015615 (Transforming growth factor-beta-related), IPR029034 (Cystine-knot cytokine), IPR001111 (TGF-beta, propeptide), IPR001839 (Transforming growth factor-beta, C-terminal) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00243151 | ||||
Corresponding_transcript | OVOC6342.1 | |||||
Corresponding_protein | OVP14556 | |||||
Matching_cDNA | ovolvulus_GG1280|c46_g2_i17 | Inferred_automatically | transcript_builder.pl | |||
Brief_identification | Growth/differentiation factor 15 homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 7.30719 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 19.7375 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | |||
21.9946 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
8.30282 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
WBls:0000664 | 13.9472 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
20.129 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Remark | [140424 es9] Gene model OVOC6342 has been split into this and OVOC13459 based on RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |