WormBase Tree Display for CDS: OVOC565
expand all nodes | collapse all nodes | view schema
OVOC565 | SMap | S_parent | Sequence | OVOC_OM1b_7 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 45 | |||
595 | 663 | |||||
873 | 945 | |||||
1056 | 1205 | |||||
1296 | 1423 | |||||
1511 | 1577 | |||||
2080 | 2165 | |||||
2310 | 2413 | |||||
2513 | 2590 | |||||
2866 | 3238 | |||||
DB_info | DB_remark | OVO-UNC-57 protein; contains similarity to Pfam domains PF00018 (SH3 domain), PF03114 (BAR domain); contains similarity to Interpro domains IPR027267 (AH/BAR domain superfamily), IPR036028 (SH3-like domain superfamily), IPR028501 (), IPR001452 (SH3 domain), IPR004148 (BAR domain) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00237374 | ||||
Corresponding_transcript | OVOC565.1 | |||||
OVOC565.2 | ||||||
Corresponding_protein | OVP11703 | |||||
Matching_cDNA | ovolvulus_GG629|c212_g3_i11 | Inferred_automatically | transcript_builder.pl | |||
ovolvulus_GG629|c212_g3_i13 | Inferred_automatically | transcript_builder.pl | ||||
ovolvulus_GG629|c212_g3_i14 | Inferred_automatically | transcript_builder.pl | ||||
Brief_identification | Endophilin-A homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (12) | |||||
WBls:0000107 | 7.53041 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 14.3198 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
15.4336 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
5.41598 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
WBls:0000664 | 36.7656 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
Method | curated |