WormBase Tree Display for CDS: OVOC5004
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OVOC5004 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM2_51 | |||
Structure | Source_exons | 1 | 195 | |||
408 | 504 | |||||
592 | 771 | |||||
938 | 1153 | |||||
1560 | 1708 | |||||
4833 | 4958 | |||||
6481 | 6714 | |||||
DB_info | DB_remark | contains similarity to Pfam domain PF00320 (GATA zinc finger); contains similarity to Interpro domains IPR039355 (Transcription factor GATA), IPR000679 (Zinc finger, GATA-type), IPR013088 (Zinc finger, NHR/GATA-type) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00241813 | ||||
Corresponding_transcript | OVOC5004.1 | |||||
Corresponding_protein | OVP13115 | |||||
Matching_cDNA | ovolvulus_GG1351|c219_g2_i8 | Inferred_automatically | transcript_builder.pl | |||
Brief_identification | Transcription factor elt-1 homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 4.108 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 2.26277 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
3.99928 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
4.56685 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
WBls:0000664 | 2.82047 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
3.21785 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Remark | [140222 es9] Merged OVOC5003 and OVOC5004 based on RNA-Seq and Compara evidence. | Curator_confirmed | WBPerson2062 | |||
Method | curated |