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WormBase Tree Display for CDS: OVOC5004

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Name Class

OVOC5004EvidenceCurator_confirmedWBPerson2062
SMapS_parentSequenceOVOC_OM2_51
StructureSource_exons1195
408504
592771
9381153
15601708
48334958
64816714
DB_infoDB_remarkcontains similarity to Pfam domain PF00320 (GATA zinc finger); contains similarity to Interpro domains IPR039355 (Transcription factor GATA), IPR000679 (Zinc finger, GATA-type), IPR013088 (Zinc finger, NHR/GATA-type)
OriginFrom_laboratoryMBM
SpeciesOnchocerca volvulus
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00241813
Corresponding_transcriptOVOC5004.1
Corresponding_proteinOVP13115
Matching_cDNAovolvulus_GG1351|c219_g2_i8Inferred_automaticallytranscript_builder.pl
Brief_identificationTranscription factor elt-1 homologPerson_evidenceWBPerson2973
RNASeq_FPKMWBls:0000104 (15)
WBls:00001074.108From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:00001082.26277From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
3.99928From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
4.56685From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
WBls:00006642.82047From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
3.21785From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
Remark[140222 es9] Merged OVOC5003 and OVOC5004 based on RNA-Seq and Compara evidence.Curator_confirmedWBPerson2062
Methodcurated