WormBase Tree Display for CDS: OVOC4455e
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OVOC4455e | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM2_21 | |||
Structure | Source_exons | 1 | 64 | |||
779 | 889 | |||||
4255 | 4330 | |||||
4673 | 4767 | |||||
5101 | 5215 | |||||
5382 | 5517 | |||||
DB_info | DB_remark | OVO-UNC-43 protein; contains similarity to Pfam domain PF08332 (Calcium/calmodulin dependent protein kinase II association domain); contains similarity to Interpro domains IPR013543 (Calcium/calmodulin-dependent protein kinase II, association-domain), IPR032710 (NTF2-like domain superfamily) | ||||
Origin (2) | ||||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Curator_confirmed | WBPerson4055 | ||||
Feature_evidence | WBsf933707 | |||||
Visible | Gene | WBGene00241264 | ||||
Corresponding_transcript | OVOC4455e.1 | |||||
Corresponding_protein | OVP14659 | |||||
Brief_identification | Calcium/calmodulin-dependent protein kinase type II homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (12) | |||||
WBls:0000107 | 23.9535 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 16.6281 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
22.332 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
43.4956 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
WBls:0000664 | 7.16173 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
7.58851 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Remark | [150217 mh6] Created this isoform based on the RNASeq splice data and the SL1 site. | Curator_confirmed | WBPerson4055 | |||
Feature_evidence | WBsf933707 | |||||
From_analysis | RNASeq | |||||
Method | curated |