WormBase Tree Display for CDS: OVOC1610
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OVOC1610 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_63 | |||
Structure | Source_exons (14) | |||||
DB_info | DB_remark | OVO-SMP-1 protein; contains similarity to Pfam domain PF01403 (Sema domain); contains similarity to Interpro domains IPR027231 (Semaphorin), IPR016201 (PSI domain), IPR001627 (Sema domain), IPR036352 (Sema domain superfamily), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00238419 | ||||
Corresponding_transcript | OVOC1610.1 | |||||
Corresponding_protein | OVP13453 | |||||
Matching_cDNA | ovolvulus_GG634|c17_g1_i6 | Inferred_automatically | transcript_builder.pl | |||
Brief_identification | Semaphorin-1A homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (14) | |||||
WBls:0000107 | 3.72888 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 11.3666 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | |||
16.6997 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
1.70277 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
WBls:0000664 | 2.36792 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
3.39755 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Remark | [140320 es9] Merged OVOC1609 and OVOC1610 based on RNA-Seq, SL1 and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |