WormBase Tree Display for CDS: OVOC11777
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| OVOC11777 | SMap | S_parent | Sequence | OVOC_OM1a_29 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 24 | |||
| 370 | 476 | |||||
| 801 | 984 | |||||
| 1061 | 1218 | |||||
| 1336 | 1483 | |||||
| 2562 | 2651 | |||||
| 3808 | 3950 | |||||
| 4102 | 4215 | |||||
| 5255 | 5486 | |||||
| DB_info | DB_remark | contains similarity to Pfam domain PF00188 (Cysteine-rich secretory protein family); contains similarity to Interpro domains IPR014044 (CAP domain), IPR035940 (CAP superfamily), IPR001283 (Cysteine-rich secretory protein-related) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00248586 | ||||
| Corresponding_transcript | OVOC11777.1 | |||||
| Corresponding_protein | OVP03575 | |||||
| Matching_cDNA | ovolvulus_GG1242|c48_g1_i5 | Inferred_automatically | transcript_builder.pl | |||
| Brief_identification | Golgi-associated plant pathogenesis-related protein 1 homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (12) | |||||
| WBls:0000107 | 13.9719 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 4.43623 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
| 6.17638 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 9.68991 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| WBls:0000664 | 0.431969 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 4.77637 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Method | curated |
