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WormBase Tree Display for CDS: CRE13526

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Name Class

CRE13526SMapS_parentSequenceCrem_Contig61
StructureSource_exons1132
201342
391560
6181115
11671481
DB_infoDatabaseTREEFAMTREEFAM_IDTF105050
DB_remarkCRE-IVD-1.2 protein; contains similarity to Pfam domains PF00441 (Acyl-CoA dehydrogenase, C-terminal domain), PF02770 (Acyl-CoA dehydrogenase, middle domain), PF02771 (Acyl-CoA dehydrogenase, N-terminal domain); contains similarity to Interpro domains IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal), IPR009075 (Acyl-CoA dehydrogenase/oxidase, C-terminal), IPR006091 (Acyl-CoA oxidase/dehydrogenase, middle domain), IPR036250 (Acyl-CoA dehydrogenase-like, C-terminal), IPR037069 (Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis remanei
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00064021
Corresponding_transcriptCRE13526.1
Corresponding_proteinRP09673
Corresponding_oligo_setGPL14146_CRE13526_300-359_0.558_222_C
GPL14146_CRE13526_378-437_0.849_71_B
Matching_cDNADR407735Inferred_automaticallytranscript_builder.pl
DY526002Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14146_CRE13526_300-359_0.558_222_C
GPL14146_CRE13526_378-437_0.849_71_B
RNASeq_FPKMWBls:00000045.79826From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
7.86214From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (54)
WBls:000002719.0649From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
59.7613From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
64.6755From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
65.19From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
WBls:000003822.8147From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
57.0671From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
63.1724From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
WBls:0000041143.918From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
149.644From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
153.844From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
62.4403From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
70.8831From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
72.0953From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
WBls:0000063115.923From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
67.0493From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
72.6564From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
75.1121From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
75.7461From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
77.2279From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
77.6586From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
81.0427From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
86.1308From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
99.7549From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
Methodcurated