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WormBase Tree Display for CDS: CJA07476b

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Name Class

CJA07476bSMapS_parentSequenceCjap.Contig16299
StructureSource_exons175
128356
23862525
26562779
36563876
DB_infoDB_remarkCJP-NDX-7 protein; contains similarity to Pfam domain PF00293 (NUDIX domain); contains similarity to Interpro domains IPR015797 (NUDIX hydrolase-like domain superfamily), IPR039121 (Acyl-coenzyme A diphosphatase NUDT19), IPR000086 (NUDIX hydrolase domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
Isoform
VisibleGeneWBGene00126680
Corresponding_transcriptCJA07476b.1
Corresponding_proteinJA62851
Corresponding_oligo_setGPL14145_CJA07476_145-204_0.562_115_C
GPL14145_CJA07476_313-372_0.870_29_B
GPL14145_CJA07476_478-537_0.711_78_A
Microarray_resultsGPL14145_CJA07476_145-204_0.562_115_C
GPL14145_CJA07476_313-372_0.870_29_B
GPL14145_CJA07476_478-537_0.711_78_A
RNASeq_FPKMWBls:00000041.48628From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000272.90475From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000386.79317From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
6.83077From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:00000410.000164From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.00021From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.000284From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.000376From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.000442From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.00088From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
3.74317From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
7.92991From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
Remarkbased on Augustus prediction Cjap.Contig16299.g10991.t2[100726 mh6]
Methodcurated