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WormBase Tree Display for CDS: CJA06656

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Name Class

CJA06656EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17948
StructureSource_exons1336
14631591
16441796
18512038
20832128
36203883
DB_infoDatabaseTREEFAMTREEFAM_IDTF313281
DB_remarkCJP-UNC-57 protein; contains similarity to Pfam domains PF00018 (SH3 domain), PF03114 (BAR domain); contains similarity to Interpro domains IPR027267 (AH/BAR domain superfamily), IPR001452 (SH3 domain), IPR036028 (SH3-like domain superfamily), IPR028501 (), IPR004148 (BAR domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00125860
Corresponding_transcriptCJA06656.1
Corresponding_proteinJA11345
Corresponding_oligo_setGPL14145_CJA06656_706-765_0.808_55_C
GPL14145_CJA06656_948-1007_0.911_10_B
GPL14145_CJA06656_1037-1096_0.967_1_A
Microarray_resultsGPL14145_CJA06656_1037-1096_0.967_1_A
GPL14145_CJA06656_706-765_0.808_55_C
GPL14145_CJA06656_948-1007_0.911_10_B
RNASeq_FPKMWBls:000000421.3751From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002730.8145From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003823.5428From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
25.837From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004110.4848From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
12.2033From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
12.9398From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
12.9539From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
30.0208From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
52.8631From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
55.298From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
68.6414From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
Remarkbased on Augustus prediction Cjap.Contig17948.g22265.t1[100726 mh6]
Methodcurated