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WormBase Tree Display for CDS: CJA04891

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Name Class

CJA04891SMapS_parentSequenceCjap.Contig18059
StructureSource_exons1186
234355
11541711
17551842
19942095
DB_infoDatabaseTREEFAMTREEFAM_IDTF317380
DB_remarkcontains similarity to Pfam domains PF01545 (Cation efflux family), PF16916 (Dimerisation domain of Zinc Transporter); contains similarity to Interpro domains IPR036837 (Cation efflux protein, cytoplasmic domain superfamily), IPR027469 (Cation efflux transmembrane domain superfamily), IPR002524 (Cation efflux protein), IPR027470 (Cation efflux protein, cytoplasmic domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCoding (2)
VisibleGeneWBGene00124095
Corresponding_transcriptCJA04891.1
Corresponding_proteinJA04946
Corresponding_oligo_setGPL14145_CJA04891_464-523_0.759_91_C
GPL14145_CJA04891_641-700_0.959_1_B
GPL14145_CJA04891_751-810_0.943_3_A
Matching_cDNAjaponica_GG11365|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA04891_464-523_0.759_91_C
GPL14145_CJA04891_641-700_0.959_1_B
GPL14145_CJA04891_751-810_0.943_3_A
RNASeq_FPKMWBls:00000042.72691From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000276.6776From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000386.95603From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
8.44646From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000412.26122From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
2.80954From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
3.04515From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
3.13839From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
4.19453From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
8.12539From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
8.18281From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
9.09328From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
Remarkbased on Augustus prediction Cjap.Contig18059.g24010.t1[100726 mh6]
Methodcurated