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WormBase Tree Display for CDS: CJA00487

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Name Class

CJA00487EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig18205
StructureSource_exons190
576771
8931006
22012524
25792733
37853913
47935131
DB_infoDB_remarkCJP-ELT-1 protein; contains similarity to Pfam domain PF00320 (GATA zinc finger); contains similarity to Interpro domains IPR039355 (Transcription factor GATA), IPR000679 (Zinc finger, GATA-type), IPR013088 (Zinc finger, NHR/GATA-type)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00119691
Corresponding_transcriptCJA00487.1
Corresponding_proteinJA63455
Corresponding_oligo_setGPL14145_CJA00487_367-426_0.738_68_C
GPL14145_CJA00487_927-986_0.882_11_B
GPL14145_CJA00487_992-1051_0.882_12_A
Matching_cDNAjaponica_GG1383|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA00487_367-426_0.738_68_C
GPL14145_CJA00487_927-986_0.882_11_B
GPL14145_CJA00487_992-1051_0.882_12_A
RNASeq_FPKMWBls:000000439.5589From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002715.3692From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000387.50044From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
7.57842From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000411.39063From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
16.9151From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
29.4431From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
30.3249From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
31.8775From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
5.31859From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
5.69819From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
5.95526From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
Remarkbased on Augustus prediction Cjap.Contig18205.g28333.t1[100726 mh6]
Methodcurated