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WormBase Tree Display for CDS: CBN24879

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Name Class

CBN24879SMapS_parentSequenceCbre_Contig12
StructureSource_exons (11)
DB_infoDatabaseTREEFAMTREEFAM_IDTF300318
DB_remarkCBN-APB-1 protein; contains similarity to Pfam domains PF01602 (Adaptin N terminal region), PF02883 (Adaptin C-terminal domain), PF09066 (Beta2-adaptin appendage, C-terminal sub-domain); contains similarity to Interpro domains IPR011989 (Armadillo-like helical), IPR002553 (Clathrin/coatomer adaptor, adaptin-like, N-terminal), IPR013037 (Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain), IPR015151 (Beta-adaptin appendage, C-terminal subdomain), IPR012295 (TBP domain superfamily), IPR013041 (Clathrin adaptor, appendage, Ig-like subdomain superfamily), IPR008152 (Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain), IPR026739 (AP complex subunit beta), IPR016024 (Armadillo-type fold), IPR016342 (AP-1/2/4 complex subunit beta), IPR009028 (Coatomer/calthrin adaptor appendage, C-terminal subdomain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00163604
Corresponding_transcriptCBN24879.1
Corresponding_proteinCN27491
Corresponding_oligo_setGPL14142_CBN24879_1889-1948_0.824_47_C
GPL14142_CBN24879_2161-2220_0.874_12_B
GPL14142_CBN24879_2310-2369_0.875_11_A
Matching_cDNAFF097639Inferred_automaticallytranscript_builder.pl
FF106602Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN24879_1889-1948_0.824_47_C
GPL14142_CBN24879_2161-2220_0.874_12_B
GPL14142_CBN24879_2310-2369_0.875_11_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
15.8885From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
15.998From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
16.4355From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
16.5135From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
18.5162From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
19.791From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
21.4865From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
7.32755From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
69.3817From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
35.9785From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
38.1202From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
38.7065From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
40.3676From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
46.9347From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:000003850.1068From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
52.8626From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
Remark[20081101 mh] original nGASP gene : Contig67.brenneri.jigsaw.50.mRNA50
[20081113 db] corrected translation frame of this protein
Methodcurated