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WormBase Tree Display for CDS: CBN19786

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Name Class

CBN19786SMapS_parentSequenceCbre_Contig12
StructureSource_exons1215
2601016
10641166
12121335
13852349
25442606
26972819
29243037
32003399
DB_infoDatabaseTREEFAMTREEFAM_IDTF323502
DB_remarkCBN-ALX-1 protein; contains similarity to Pfam domains PF03097 (BRO1-like domain), PF13949 (ALIX V-shaped domain binding to HIV); contains similarity to Interpro domains IPR004328 (BRO1 domain), IPR038499 (BRO1 domain superfamily), IPR025304 (ALIX V-shaped domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00158511
Corresponding_transcriptCBN19786.1
Corresponding_proteinCN03929
Corresponding_oligo_set (3)
Matching_cDNAFD511384Inferred_automaticallytranscript_builder.pl
FF083700Inferred_automaticallytranscript_builder.pl
FF089034Inferred_automaticallytranscript_builder.pl
FF090668Inferred_automaticallytranscript_builder.pl
FF097631Inferred_automaticallytranscript_builder.pl
FF101761Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN19786_1435-1494_0.836_57_C
GPL14142_CBN19786_2054-2113_0.891_24_A
GPL14142_CBN19786_2106-2165_0.830_61_B
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
23.4527From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
31.2201From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
31.7639From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
38.8455From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
44.478From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
47.8232From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
48.628From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
48.9077From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
165.149From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
53.7476From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
57.4269From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
76.6408From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
79.3904From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
79.8381From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
WBls:000003878.6755From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
79.1131From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (15)
RemarkContig33.brenneri.jigsaw.108.mRNA108
Methodcurated