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WormBase Tree Display for CDS: CBN19358

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Name Class

CBN19358SMapS_parentSequenceCbre_Contig12
StructureSource_exons126
72195
317422
563630
7181022
10681142
11941696
17441952
DB_infoDatabaseTREEFAMTREEFAM_IDTF300633
DB_remarkcontains similarity to Pfam domains PF01546 (Peptidase family M20/M25/M40), PF07687 (Peptidase dimerisation domain); contains similarity to Interpro domains IPR017153 (Cytosolic nonspecific dipeptidase/DUG1), IPR011650 (Peptidase M20, dimerisation domain), IPR002933 (Peptidase M20)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00158083
Corresponding_transcriptCBN19358.1
Corresponding_proteinCN27855
Corresponding_oligo_setGPL14142_CBN19358_1003-1062_0.926_4_B
GPL14142_CBN19358_1098-1157_0.917_7_A
GPL14142_CBN19358_874-933_0.917_6_C
Matching_cDNAFF102548Inferred_automaticallytranscript_builder.pl
FF107221Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN19358_874-933_0.917_6_C
GPL14142_CBN19358_1003-1062_0.926_4_B
GPL14142_CBN19358_1098-1157_0.917_7_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
22.6082From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
25.9138From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
33.4502From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
35.0046From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
36.4808From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
39.5303From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
41.5937From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
41.59From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
53.4911From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
10.2888From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
12.654From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
27.9813From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
35.4689From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
8.18494From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
WBls:000003873.789From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
75.7146From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
Remark[20081101 mh] original nGASP gene : Contig67.brenneri.jigsaw.36.mRNA36
[20081113 db] corrected translation frame of this protein
Methodcurated