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WormBase Tree Display for CDS: CBN16370

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Name Class

CBN16370SMapS_parentSequenceCbre_Contig12
StructureSource_exons152
117247
292378
534639
690795
852942
9871074
11711324
13701555
16041733
DB_infoDatabaseTREEFAMTREEFAM_IDTF314037
DB_remarkCBN-GTF-2H2C protein; contains similarity to Pfam domains PF04056 (Ssl1-like), PF07975 (TFIIH C1-like domain); contains similarity to Interpro domains IPR036465 (von Willebrand factor A-like domain superfamily), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR012170 (TFIIH subunit Ssl1/p44), IPR007198 (Ssl1-like), IPR004595 (TFIIH C1-like domain), IPR002035 (von Willebrand factor, type A)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00155095
Corresponding_transcriptCBN16370.1
Corresponding_proteinCN21544
Corresponding_oligo_setGPL14142_CBN16370_123-182_0.691_91_A
GPL14142_CBN16370_293-352_0.849_38_C
GPL14142_CBN16370_405-464_0.888_16_B
Matching_cDNAFF099586Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN16370_123-182_0.691_91_A
GPL14142_CBN16370_293-352_0.849_38_C
GPL14142_CBN16370_405-464_0.888_16_B
RNASeq_FPKMWBls:00000020From_analysis (2)
10.204From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
10.5351From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
11.3208From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
15.3309From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
15.7232From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
15.8261From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
18.2807From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
8.65594From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
40.8374From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
17.6335From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
18.9778From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
20.5084From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
20.527From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
20.877From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
WBls:000003824.6828From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
25.5663From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig33.brenneri.jigsaw.138.mRNA138
Methodcurated