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WormBase Tree Display for CDS: CBN15594

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Name Class

CBN15594SMapS_parentSequenceCbre_Contig12
StructureSource_exons1126
173451
5011231
14622112
21672740
DB_infoDatabaseTREEFAMTREEFAM_IDTF300578
DB_remarkCBN-RNR-1 protein; contains similarity to Pfam domains PF00317 (Ribonucleotide reductase, all-alpha domain), PF02867 (Ribonucleotide reductase, barrel domain), PF03477 (ATP cone domain); contains similarity to Interpro domains IPR013509 (Ribonucleotide reductase large subunit, N-terminal), IPR013346 (Ribonucleotide reductase, class I, alpha subunit, C-terminal), IPR005144 (ATP-cone domain), IPR000788 (Ribonucleotide reductase large subunit, C-terminal), IPR039718 (Ribonucleoside-diphosphate reductase large subunit), IPR008926 (Ribonucleotide reductase R1 subunit, N-terminal)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00154319
Corresponding_transcriptCBN15594.1
Corresponding_proteinCN02853
Corresponding_oligo_setGPL14142_CBN15594_2020-2079_0.941_8_C
GPL14142_CBN15594_2134-2193_0.962_1_B
GPL14142_CBN15594_2196-2255_0.919_26_A
Matching_cDNAFF083789Inferred_automaticallytranscript_builder.pl
FF092894Inferred_automaticallytranscript_builder.pl
FF106498Inferred_automaticallytranscript_builder.pl
FF106692Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN15594_2020-2079_0.941_8_C
GPL14142_CBN15594_2134-2193_0.962_1_B
GPL14142_CBN15594_2196-2255_0.919_26_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
102.972From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
108.311From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
134.068From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
146.925From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
49.1141From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
77.5491From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
80.3125From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
88.2951From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
416.059From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
29.3644From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
34.6972From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
34.8671From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
38.9631From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
43.541From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:000003829.8199From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
33.5558From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig50.brenneri.jigsaw.24.mRNA24
Methodcurated