WormBase Tree Display for CDS: CBN13034

CBN13034 SMap: S_parent: Sequence: Cbre_Contig12
  Structure: Source_exons: 1 458
      505 997
      1046 1147
      1196 1719
      1764 2256
  DB_info: Database: TREEFAM TREEFAM_ID TF300364
    DB_remark: CBN-LAF-1 protein; contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase), PF00271 (Helicase conserved C-terminal domain); contains similarity to Interpro domains IPR011545 (DEAD/DEAH box helicase domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR014001 (Helicase superfamily 1/2, ATP-binding domain), IPR001650 (Helicase, C-terminal domain-like)
  Origin: From_laboratory: RW
    Species: Caenorhabditis brenneri
  Properties: Coding: CDS
      Prediction_status: Predicted
  Visible: Gene: WBGene00151759
    Corresponding_transcript: CBN13034.1
    Corresponding_protein: CN27298
    Corresponding_oligo_set: GPL14142_CBN13034_1373-1432_0.904_8_B
      GPL14142_CBN13034_1642-1701_0.887_19_C
      GPL14142_CBN13034_1737-1796_0.938_2_A
    Microarray_results: GPL14142_CBN13034_1373-1432_0.904_8_B
      GPL14142_CBN13034_1642-1701_0.887_19_C
      GPL14142_CBN13034_1737-1796_0.938_2_A
    RNASeq_FPKM: WBls:0000002 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
        2.31831 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
        4.3538 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
        5.27237 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
        6.91349 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
        7.03335 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
        7.78033 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
        8.33934 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
        8.54124 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
      WBls:0000004 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
        48.0287 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
      WBls:0000024 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        112.291 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        119.951 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        60.4603 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
        69.9782 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
        75.2848 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
      WBls:0000038 12.8321 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
        14.4288 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
      WBls:0000041 (15)
    Remark: [20081101 mh] original nGASP gene : Contig67.brenneri.jigsaw.56.mRNA56
      [20081113 db] corrected translation frame of this protein
  Method: curated