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WormBase Tree Display for CDS: CBN12556

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Name Class

CBN12556SMapS_parentSequenceCbre_Contig12
StructureSource_exons (12)
DB_infoDB_remarkCBN-NHL-1 protein; contains similarity to Pfam domains PF00097 (Zinc finger, C3HC4 type (RING finger)), PF01436 (NHL repeat); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR011042 (Six-bladed beta-propeller, TolB-like), IPR018957 (Zinc finger, C3HC4 RING-type), IPR001258 (NHL repeat)
Origin (2)
PropertiesCodingCDS
Prediction_statusPredicted
VisibleGeneWBGene00151281
Corresponding_transcriptCBN12556.1
Corresponding_proteinCN22628
Corresponding_oligo_setGPL14142_CBN12556_2406-2465_0.927_12_C
GPL14142_CBN12556_2535-2594_0.912_19_A
GPL14142_CBN12556_2805-2864_0.940_2_B
Microarray_resultsGPL14142_CBN12556_2406-2465_0.927_12_C
GPL14142_CBN12556_2535-2594_0.912_19_A
GPL14142_CBN12556_2805-2864_0.940_2_B
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
1.49038From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
2.88771From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
4.2947From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
4.55116From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
4.62937From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
5.32667From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
5.4418From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
9.94818From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
1.34766From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
15.8151From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
17.8483From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
19.6319From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
20.6191From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
22.3389From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:000003818.0428From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
18.7101From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig50.brenneri.jigsaw.12.mRNA12
Methodcurated