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WormBase Tree Display for CDS: CBN05641

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Name Class

CBN05641SMapS_parentSequenceCbre_Contig12
StructureSource_exons1507
DB_infoDatabaseTREEFAMTREEFAM_IDTF300025
DB_remarkCBN-VHA-1 protein; contains similarity to Pfam domain PF00137 (ATP synthase subunit C); contains similarity to Interpro domains IPR002379 (V-ATPase proteolipid subunit C-like domain), IPR011555 (V-ATPase proteolipid subunit C, eukaryotic), IPR035921 (F/V-ATP synthase subunit C superfamily), IPR000245 (V-ATPase proteolipid subunit)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00144366
Corresponding_transcriptCBN05641.1
Corresponding_proteinCN04343
Corresponding_oligo_setGPL14142_CBN05641_261-320_0.814_5_A
GPL14142_CBN05641_402-461_0.724_17_C
GPL14142_CBN05641_91-150_0.891_2_B
Matching_cDNAFF085431Inferred_automaticallytranscript_builder.pl
FF085495Inferred_automaticallytranscript_builder.pl
FF090298Inferred_automaticallytranscript_builder.pl
FF093006Inferred_automaticallytranscript_builder.pl
FF093186Inferred_automaticallytranscript_builder.pl
FF094173Inferred_automaticallytranscript_builder.pl
FF102197Inferred_automaticallytranscript_builder.pl
FF107782Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN05641_91-150_0.891_2_B
GPL14142_CBN05641_261-320_0.814_5_A
GPL14142_CBN05641_402-461_0.724_17_C
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
167.321From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
295.054From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
327.121From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
370.525From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
453.398From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
494.779From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
520.815From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
677.72From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
169.482From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
366.053From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
388.944From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
448.624From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
456.381From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
461.258From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
WBls:0000038737.966From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
796.688From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (15)
RemarkContig33.brenneri.jigsaw.65.mRNA65
Methodcurated