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WormBase Tree Display for CDS: CBN02731

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Name Class

CBN02731SMapS_parentSequenceCbre_Contig12
StructureSource_exons1132
178353
9061024
11221246
DB_infoDatabaseTREEFAMTREEFAM_IDTF105633
DB_remarkcontains similarity to Interpro domain IPR016680 (NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 8)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00141456
Corresponding_transcriptCBN02731.1
Corresponding_proteinCN37785
Corresponding_oligo_setGPL14142_CBN02731_125-184_0.965_1_B
GPL14142_CBN02731_128-187_0.957_2_C
GPL14142_CBN02731_216-275_0.898_21_A
Matching_cDNAFF087726Inferred_automaticallytranscript_builder.pl
FF091606Inferred_automaticallytranscript_builder.pl
FF093490Inferred_automaticallytranscript_builder.pl
FF093953Inferred_automaticallytranscript_builder.pl
FF103710Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN02731_125-184_0.965_1_B
GPL14142_CBN02731_128-187_0.957_2_C
GPL14142_CBN02731_216-275_0.898_21_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
12.7072From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
16.705From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
16.9681From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
19.1168From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
22.2523From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
23.3393From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
37.9936From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
43.8702From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
72.4607From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
198.111From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
204.77From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
247.464From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
269.105From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
327.22From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
WBls:0000038257.433From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
271.788From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (15)
Remark[20081101 mh] original nGASP gene : Contig67.brenneri.jigsaw.25.mRNA25
[20081113 db] corrected translation frame of this protein
Methodcurated