WormBase Tree Display for CDS: CBN01250
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CBN01250 | SMap | S_parent | Sequence | Cbre_Contig12 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 27 | ||
669 | 760 | ||||
809 | 989 | ||||
1123 | 1263 | ||||
1671 | 2129 | ||||
2184 | 2320 | ||||
2389 | 2485 | ||||
DB_info | Database | TREEFAM | TREEFAM_ID | TF300836 | |
DB_remark | CBN-GPDH-2 protein; contains similarity to Pfam domains PF01210 (NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus), PF07479 (NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus); contains similarity to Interpro domains IPR008927 (6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily), IPR006168 (Glycerol-3-phosphate dehydrogenase, NAD-dependent), IPR017751 (Glycerol-3-phosphate dehydrogenase, NAD-dependent, eukaryotic), IPR006109 (Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal), IPR013328 (6-phosphogluconate dehydrogenase, domain 2), IPR036291 (NAD(P)-binding domain superfamily), IPR011128 (Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal) | ||||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis brenneri | ||||
Properties | Coding | CDS | |||
Prediction_status | Partially_confirmed | ||||
Visible | Gene | WBGene00139975 | |||
Corresponding_transcript | CBN01250.1 | ||||
Corresponding_protein | CN02977 | ||||
Corresponding_oligo_set | GPL14142_CBN01250_161-220_0.875_39_C | ||||
GPL14142_CBN01250_367-426_0.854_59_B | |||||
GPL14142_CBN01250_513-572_0.894_29_A | |||||
Matching_cDNA | FD510842 | Inferred_automatically | transcript_builder.pl | ||
FF087166 | Inferred_automatically | transcript_builder.pl | |||
FF092752 | Inferred_automatically | transcript_builder.pl | |||
FF099742 | Inferred_automatically | transcript_builder.pl | |||
FF102795 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14142_CBN01250_161-220_0.875_39_C | ||||
GPL14142_CBN01250_367-426_0.854_59_B | |||||
GPL14142_CBN01250_513-572_0.894_29_A | |||||
RNASeq_FPKM (5) | |||||
Remark | Contig33.brenneri.jigsaw.90.mRNA90 | ||||
Method | curated |