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WormBase Tree Display for CDS: CBN01250

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Name Class

CBN01250SMapS_parentSequenceCbre_Contig12
StructureSource_exons127
669760
809989
11231263
16712129
21842320
23892485
DB_infoDatabaseTREEFAMTREEFAM_IDTF300836
DB_remarkCBN-GPDH-2 protein; contains similarity to Pfam domains PF01210 (NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus), PF07479 (NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus); contains similarity to Interpro domains IPR008927 (6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily), IPR006168 (Glycerol-3-phosphate dehydrogenase, NAD-dependent), IPR017751 (Glycerol-3-phosphate dehydrogenase, NAD-dependent, eukaryotic), IPR006109 (Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal), IPR013328 (6-phosphogluconate dehydrogenase, domain 2), IPR036291 (NAD(P)-binding domain superfamily), IPR011128 (Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00139975
Corresponding_transcriptCBN01250.1
Corresponding_proteinCN02977
Corresponding_oligo_setGPL14142_CBN01250_161-220_0.875_39_C
GPL14142_CBN01250_367-426_0.854_59_B
GPL14142_CBN01250_513-572_0.894_29_A
Matching_cDNAFD510842Inferred_automaticallytranscript_builder.pl
FF087166Inferred_automaticallytranscript_builder.pl
FF092752Inferred_automaticallytranscript_builder.pl
FF099742Inferred_automaticallytranscript_builder.pl
FF102795Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN01250_161-220_0.875_39_C
GPL14142_CBN01250_367-426_0.854_59_B
GPL14142_CBN01250_513-572_0.894_29_A
RNASeq_FPKM (5)
RemarkContig33.brenneri.jigsaw.90.mRNA90
Methodcurated