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WormBase Tree Display for CDS: CBN01250

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Name Class

CBN01250SMapS_parentSequenceCbre_Contig12
StructureSource_exons127
669760
809989
11231263
16712129
21842320
23892485
DB_infoDatabaseTREEFAMTREEFAM_IDTF300836
DB_remarkCBN-GPDH-2 protein; contains similarity to Pfam domains PF01210 (NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus), PF07479 (NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus); contains similarity to Interpro domains IPR008927 (6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily), IPR006168 (Glycerol-3-phosphate dehydrogenase, NAD-dependent), IPR017751 (Glycerol-3-phosphate dehydrogenase, NAD-dependent, eukaryotic), IPR006109 (Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal), IPR013328 (6-phosphogluconate dehydrogenase, domain 2), IPR036291 (NAD(P)-binding domain superfamily), IPR011128 (Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00139975
Corresponding_transcriptCBN01250.1
Corresponding_proteinCN02977
Corresponding_oligo_setGPL14142_CBN01250_161-220_0.875_39_C
GPL14142_CBN01250_367-426_0.854_59_B
GPL14142_CBN01250_513-572_0.894_29_A
Matching_cDNAFD510842Inferred_automaticallytranscript_builder.pl
FF087166Inferred_automaticallytranscript_builder.pl
FF092752Inferred_automaticallytranscript_builder.pl
FF099742Inferred_automaticallytranscript_builder.pl
FF102795Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN01250_161-220_0.875_39_C
GPL14142_CBN01250_367-426_0.854_59_B
GPL14142_CBN01250_513-572_0.894_29_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
50.4053From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
52.6327From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
57.6587From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
58.4842From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
61.2756From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
79.1982From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
91.6034From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
93.1796From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
87.8606From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
101.833From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
56.3775From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
63.966From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
78.2222From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
83.5371From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
WBls:0000038301.683From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
308.881From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig33.brenneri.jigsaw.90.mRNA90
Methodcurated