WormBase Tree Display for CDS: CBG23507
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CBG23507 | SMap | S_parent | Sequence | cb25.fpc4470 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 198 | ||
259 | 341 | ||||
386 | 769 | ||||
1072 | 1189 | ||||
1239 | 1333 | ||||
1688 | 1982 | ||||
2031 | 2141 | ||||
2189 | 2302 | ||||
DB_info | Database | UniProt | UniProtAcc | A8Y3R6 | |
UniProtId | A8Y3R6_CAEBR | ||||
TrEMBL | UniProtAcc | A8Y3R6 | |||
UniProt_GCRP | UniProtAcc | A8Y3R6 | |||
Protein_id | cb25.fpc4470 | CAP39535 | 1 | ||
DB_remark | CBR-INX-11 protein; contains similarity to Pfam domain PF00876 (Innexin); contains similarity to Interpro domains IPR031123 (), IPR000990 (Innexin) | ||||
Origin | From_laboratory | CB | |||
Species | Caenorhabditis briggsae | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Visible | Gene | WBGene00041852 | |||
Corresponding_transcript | CBG23507.1 | ||||
Corresponding_protein | CBP05492 | ||||
Corresponding_oligo_set | GPL8303_CB6_WBGene00041852_A | ||||
GPL8303_CB6_WBGene00041852_B | |||||
GPL8303_CB6_WBGene00041852_C | |||||
GPL14143_CBG23507_611-670_0.899_17_C | |||||
GPL14143_CBG23507_702-761_0.903_13_A | |||||
GPL14143_CBG23507_797-856_0.740_95_B | |||||
Matching_cDNA | briggsae_GG1843|c7_g1_i1 | Inferred_automatically | transcript_builder.pl | ||
Microarray_results | GPL8303_CB6_WBGene00041852_A | ||||
GPL8303_CB6_WBGene00041852_B | |||||
GPL8303_CB6_WBGene00041852_C | |||||
GPL14143_CBG23507_611-670_0.899_17_C | |||||
GPL14143_CBG23507_702-761_0.903_13_A | |||||
GPL14143_CBG23507_797-856_0.740_95_B | |||||
RNASeq_FPKM (9) | |||||
Last_reviewed | 31 Aug 2016 10:21:23 | WBPerson4025 | |||
Remark | [gffnote] orthologous to W04D2.3 by best mutual match (eval=0) ; Ortholog W04D2.3 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP05492 ; Gene WBGene00041852 | ||||
[20080722 tb] Modified based on Jigsaw gene ContigchrV.briggsae.jigsaw.1515 | |||||
[160826 gw3] The structure of this CDS has been confirmed by the Trinity model 'briggsae_GG1843|c7_g2_i1-chrV-1b.extended'. | Curator_confirmed | WBPerson4025 | |||
Method | curated |