WormBase Tree Display for CDS: CBG19079
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| CBG19079 | SMap | S_parent | Sequence | cb25.fpc4126 | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 68 | ||
| 516 | 598 | ||||
| 649 | 720 | ||||
| 767 | 1183 | ||||
| 1234 | 1345 | ||||
| 1393 | 1798 | ||||
| DB_info | Database | UniProt | UniProtAcc | A8XUR0 | |
| UniProtId | A8XUR0_CAEBR | ||||
| TrEMBL | UniProtAcc | A8XUR0 | |||
| UniProt_GCRP | UniProtAcc | A8XUR0 | |||
| TREEFAM | TREEFAM_ID | TF315401 | |||
| Protein_id | cb25.fpc4126 | CAP36385 | 2 | ||
| DB_remark | CBR-NHR-286 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | ||||
| Origin | From_laboratory | CB | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Visible | Gene | WBGene00038356 | |||
| Corresponding_transcript | CBG19079.1 | ||||
| Corresponding_protein | CBP42994 | ||||
| Corresponding_oligo_set | GPL8303_CB6_WBGene00038356_A | ||||
| GPL8303_CB6_WBGene00038356_B | |||||
| GPL14143_CBG19079_578-637_0.914_13_C | |||||
| GPL14143_CBG19079_837-896_0.945_5_B | |||||
| GPL14143_CBG19079_930-989_0.960_1_A | |||||
| Matching_cDNA | briggsae_GG1987|c1_g1_i1 | Inferred_automatically | transcript_builder.pl | ||
| briggsae_GG1987|c1_g3_i1 | Inferred_automatically | transcript_builder.pl | |||
| briggsae_GG1987|c1_g2_i1 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL8303_CB6_WBGene00038356_A | ||||
| GPL8303_CB6_WBGene00038356_B | |||||
| GPL14143_CBG19079_578-637_0.914_13_C | |||||
| GPL14143_CBG19079_837-896_0.945_5_B | |||||
| GPL14143_CBG19079_930-989_0.960_1_A | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 31 Aug 2016 10:21:21 | WBPerson4025 | |||
| Remark | [gffnote] orthologous to C33G8.12 by best match + synteny (eval=6e-12) ; Ortholog C33G8.12 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP23853 ; Gene WBGene00038356 | ||||
| [20080722 tb] Modified based on Jigsaw gene ContigchrV.briggsae.jigsaw.2611 | |||||
| [160826 gw3] This CDS has been updated by using the Trinity model 'briggsae_GG1987|c1_g3_i1-chrV-1.extended'. | Curator_confirmed | WBPerson4025 | |||
| Method | curated |
