| CBG11064a | SMap | S_parent | Sequence | cb25.fpc2441 |
|---|
| Structure | Source_exons | 1 | 203 |
| | | 1041 | 1195 |
| | | 1449 | 1687 |
| | | 1892 | 2074 |
| | | 2892 | 3042 |
| | | 3367 | 3476 |
| | | 4749 | 4926 |
| | | 8454 | 8582 |
| | | 9685 | 10131 |
| | | 10178 | 10568 |
| | | 11323 | 11480 |
| | | 22325 | 22627 |
| | | 22763 | 23041 |
| | | 23587 | 23917 |
| | | 25283 | 25625 |
| | | 27312 | 27584 |
| | | 27638 | 27726 |
| | | 27879 | 28490 |
| | | 28620 | 28813 |
| | | 29454 | 29542 |
| | | 30623 | 30812 |
| | | 31577 | 31855 |
| | | 32493 | 32780 |
| | | 32838 | 33389 |
| | | 33520 | 33816 |
| | | 33940 | 34218 |
| | | 34336 | 34614 |
| | | 34878 | 35647 |
| | | 36079 | 36259 |
| | | 36345 | 36712 |
| DB_info | Database | UniProt | UniProtAcc | A8XCB6 |
| | | | UniProtId | A8XCB6_CAEBR |
| | DB_remark | CBR-UNC-52 protein; contains similarity to Pfam domains PF00052 (Laminin B (Domain IV)), PF00053 (Laminin EGF domain), PF00057 (Low-density lipoprotein receptor domain class A), PF13895 (Immunoglobulin domain), PF13927 (Immunoglobulin domain); contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR036055 (LDL receptor-like superfamily), IPR000034 (Laminin IV), IPR013783 (Immunoglobulin-like fold), IPR002049 (Laminin-type EGF domain), IPR036179 (Immunoglobulin-like domain superfamily), IPR002172 (Low-density lipoprotein (LDL) receptor class A repeat), IPR007110 (Immunoglobulin-like domain), IPR003599 (Immunoglobulin subtype) |
| Origin | From_laboratory | RW |
| | Species | Caenorhabditis briggsae |
| Properties | Coding | CDS |
| | | Prediction_status | Confirmed |
| | Isoform | Curator_confirmed | WBPerson4025 |
| Visible | Gene | WBGene00032251 |
| | Corresponding_transcript | CBG11064a.1 |
| | Corresponding_protein | CBP42975 |
| | Corresponding_oligo_set | GPL14143_CBG11064_2905-2964_0.793_117_A |
| | | GPL14143_CBG11065_649-708_0.804_84_B |
| | | GPL14143_CBG11065_947-1006_0.813_76_A |
| | | GPL14143_CBG11065_1577-1636_0.876_32_C |
| | Matching_cDNA | DQ482062 | Inferred_automatically | transcript_builder.pl |
| | | briggsae_GG6132|c8_g1_i9 | Inferred_automatically | transcript_builder.pl |
| | | briggsae_GG6132|c3_g1_i1 | Inferred_automatically | transcript_builder.pl |
| | | briggsae_GG6132|c8_g1_i3 | Inferred_automatically | transcript_builder.pl |
| | Microarray_results | GPL14143_CBG11064_2905-2964_0.793_117_A |
| | | GPL14143_CBG11065_649-708_0.804_84_B |
| | | GPL14143_CBG11065_947-1006_0.813_76_A |
| | | GPL14143_CBG11065_1577-1636_0.876_32_C |
| | RNASeq_FPKM | WBls:0000002 | 0.02253 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717 |
| | | | 0.040243 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351 |
| | | | 0.045846 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749 |
| | | | 0.07208 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718 |
| | | WBls:0000003 | 0 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708 |
| | | WBls:0000004 | 0.533507 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070 |
| | | | 0 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656 |
| | | WBls:0000024 | 0.122912 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711 |
| | | | 0.17457 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786 |
| | | | 0.180097 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710 |
| | | | 0 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791 |
| | | WBls:0000027 | 0.026489 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712 |
| | | | 0 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079 |
| | | WBls:0000035 | 0 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713 |
| | | WBls:0000038 | 0.017233 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714 |
| | | | 0 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089 |
| | | WBls:0000041 | 0.011371 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958 |
| | | | 0.014894 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955 |
| | | | 0 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957 |
| | | WBls:0000063 | 0.073124 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086 |
| | | | 0.169138 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668 |
| | | | 0 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716 |
| | Last_reviewed | 31 Aug 2016 10:21:17 | WBPerson4025 |
| | Remark | [gffnote] Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP02700 ; Gene WBGene00032251 |
| | | added internal exons based on mRNA data. [20110907 tb] | Accession_evidence | EMBL | DQ482062 |
| | | [131024 gw3] Extended to the START codon. | Curator_confirmed | WBPerson4025 |
| | | [160826 gw3] The set of genes: WBGene00032252 WBGene00032251 has been merged and this structure is based on the Trinity model 'briggsae_GG6132|c8_g1_i3-chrII-1.extended'. | Curator_confirmed | WBPerson4025 |
| Method | curated |
