WormBase Tree Display for CDS: C41G7.1a
expand all nodes | collapse all nodes | view schema
C41G7.1a | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C41G7 | |||
Structure | Source_exons | 1 | 72 | |||
116 | 181 | |||||
230 | 470 | |||||
518 | 732 | |||||
DB_info | Database | TrEMBL | UniProtAcc | G5EFQ8 | ||
UniProt | UniProtAcc | G5EFQ8 | ||||
AlphaFold | entry | G5EFQ8 | ||||
NCBI_protein | GI_number | GI:3874905 | ||||
Protein_id | CHROMOSOME_I | CAB02838 | 1 | |||
DB_remark | SMN-1 protein; contains similarity to Pfam domains PF20635 (Survival Motor Neuron, YG-box), PF20636 (Survival Motor Neuron, Gemin2-binding domain); contains similarity to Interpro domains IPR040424 (SMN complex subunit Smn1), IPR049481 (Survival Motor Neuron, Gemin2-binding domain), IPR002999 (Tudor domain) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Isoform | Accession_evidence | NDB | AF156887 | |||
Inferred_automatically | transcript_builder | |||||
Visible | Gene | WBGene00004887 | ||||
Corresponding_transcript | C41G7.1a.1 | |||||
C41G7.1a.2 | ||||||
Corresponding_protein | CE08665 | |||||
Corresponding_PCR_product | cenix:230-a7 | |||||
mv_AAF00192 | ||||||
mv_CAB41945 | ||||||
sjj_C41G7.1 | ||||||
Corresponding_oligo_set (16) | ||||||
Matching_cDNA (52) | ||||||
RNAi_result (22) | ||||||
Microarray_results (19) | ||||||
Brief_identification | Tudor domain-containing protein | Accession_evidence | UniProt | TR:G5EFQ8 | ||
RNASeq_FPKM (74) | ||||||
Method | curated |