WormBase Tree Display for CDS: C25D7.8
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C25D7.8 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C25D7 | |||
Structure | Source_exons | 1 | 111 | |||
162 | 905 | |||||
DB_info | Database | KEGG | KEGG_id | 3.4.19.12 | ||
SwissProt | UniProtAcc | Q9XVR6 | ||||
UniProt | UniProtAcc | Q9XVR6 | ||||
AlphaFold | entry | Q9XVR6 | ||||
UniProt_GCRP | UniProtAcc | Q9XVR6 | ||||
NCBI_protein | GI_number | GI:3874447 | ||||
TREEFAM | TREEFAM_ID | TF314145 | ||||
Protein_id | CHROMOSOME_V | CAB02772 | 1 | |||
DB_remark | OTUB-1 protein; contains similarity to Pfam domain PF10275 (Peptidase C65 Otubain); contains similarity to Interpro domains IPR042468 (Peptidase C65, otubain, subdomain 1), IPR016615 (Ubiquitin thioesterase Otubain), IPR019400 (Peptidase C65, otubain), IPR042467 (Peptidase C65, otubain, subdomain 2), IPR038765 (Papain-like cysteine peptidase superfamily) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00007718 | ||||
Corresponding_transcript | C25D7.8.1 | |||||
Corresponding_protein | CE08394 | |||||
Corresponding_PCR_product | cenix:51-g1 | |||||
cenix:68-e5 | ||||||
mv_C25D7.8 | ||||||
sjj_C25D7.8 | ||||||
Corresponding_oligo_set (14) | ||||||
Matching_cDNA (26) | ||||||
RNAi_result | WBRNAi00041176 | |||||
WBRNAi00029190 | ||||||
WBRNAi00041177 | ||||||
WBRNAi00062133 | ||||||
WBRNAi00011156 | ||||||
Microarray_results (16) | ||||||
Brief_identification | Ubiquitin thioesterase otubain-like | Accession_evidence | UniProt | SP:Q9XVR6 | ||
RNASeq_FPKM (74) | ||||||
Associated_feature | WBsf011521 | |||||
Method | curated |