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WormBase Tree Display for CDS: Bm4419

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Name Class

Bm4419EvidenceCurator_confirmedWBPerson4055
SMapS_parentSequenceBm_v4_Chr3_scaffold_001
StructureSource_exons (45)
DB_infoDatabaseTrEMBLUniProtAccA0A0H5S196
UniProtUniProtAccA0A0H5S196
AlphaFoldentryA0A0H5S196
UniProt_GCRPUniProtAccA0A0H5S196
Protein_idBm_v4_Chr3_scaffold_001CRZ223901
DB_remarkBMA-UNC-73 protein; contains similarity to Pfam domains PF00435 (Spectrin repeat), PF00621 (RhoGEF domain), PF13716 (Divergent CRAL/TRIO domain); contains similarity to Interpro domains IPR002017 (Spectrin repeat), IPR000219 (Dbl homology (DH) domain), IPR035899 (Dbl homology (DH) domain superfamily), IPR001849 (Pleckstrin homology domain), IPR001251 (CRAL-TRIO lipid binding domain), IPR001452 (SH3 domain), IPR018159 (Spectrin/alpha-actinin), IPR011993 (PH-like domain superfamily), IPR036028 (SH3-like domain superfamily), IPR036865 (CRAL-TRIO lipid binding domain superfamily)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusPartially_confirmed
VisibleGeneWBGene00224680
Corresponding_transcriptBm4419.1
Corresponding_proteinBM48574
Matching_cDNAbrugia_GG74|c1_g2_i1Inferred_automaticallytranscript_builder.pl
Brief_identificationRhoGEF domain containing proteinAccession_evidenceTIGRBm1_00750
RNASeq_FPKMWBls:000007810.4052From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
10.8768From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
20.4615From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
21.6115From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
32.5379From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
34.5021From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
38.9658From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
WBls:00000802.8243From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
4.19012From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
5.25123From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
5.276From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
WBls:0000081 (23)
WBls:00000825.405From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
6.10037From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
6.10519From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
7.09621From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
9.36372From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
WBls:0000083 (80)
WBls:000009215.5152From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
17.0473From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:000009412.7709From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
14.112From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:00000970From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
38.4523From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
4.20053From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
5.29631From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
8.01452From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
9.40343From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
WBls:000066210.1363From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
8.67764From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
WBls:00006639.15588From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Last_reviewed10 May 2019 13:57:59WBPerson4055
Remark[140728 mh6] Created this isoform based on the RNASeq splice data.Curator_confirmedWBPerson4055
From_analysisRNASeq
[190510 mh6] The set of genes: WBGene00224680 WBGene00228770 WBGene00224679 WBGene00224679 WBGene00224679 WBGene00224679 has been merged and this structure is based on the RNASeq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated