WormBase Tree Display for CDS: Y73B6A.5b
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| Y73B6A.5b | SMap | S_parent | Sequence | Y73B6A | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (13) | |||||
| DB_info | Database | KEGG | KEGG_id | 2.7.11.1 | ||
| SwissProt | UniProtAcc | Q07292 | ||||
| UniProt | UniProtAcc | Q07292 | ||||
| AlphaFold | entry | Q07292 | ||||
| UniProt_GCRP | UniProtAcc | Q07292 | ||||
| NCBI_protein | GI_number | GI:563403375 | ||||
| Protein_id | CHROMOSOME_IV | CCD62344 | 2 | |||
| DB_remark | LIN-45 protein; contains similarity to Pfam domains PF00130 (Phorbol esters/diacylglycerol binding domain (C1 domain)), PF02196 (Raf-like Ras-binding domain), PF07714 (Protein tyrosine and serine/threonine kinase); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR029071 (Ubiquitin-like domain superfamily), IPR046349 (C1-like domain superfamily), IPR050167 (Serine/threonine-protein kinase), IPR001245 (Serine-threonine/tyrosine-protein kinase, catalytic domain), IPR003116 (Raf-like Ras-binding), IPR000719 (Protein kinase domain), IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol-binding domain) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Isoform | Accession_evidence | EMBL | BJ129589 | |||
| Inferred_automatically | transcript_builder | |||||
| Visible | Gene | WBGene00003030 | ||||
| Corresponding_transcript | Y73B6A.5b.1 | |||||
| Corresponding_protein | CE49395 | |||||
| Corresponding_PCR_product | WBPaper00038381:Y73B6A_1_1 | |||||
| cenix:55-e1 | ||||||
| mv_AAA28142 | ||||||
| Corresponding_oligo_set (25) | ||||||
| Matching_cDNA (20) | ||||||
| RNAi_result | WBRNAi00097646 | |||||
| WBRNAi00097649 | ||||||
| WBRNAi00001878 | ||||||
| WBRNAi00058308 | ||||||
| WBRNAi00108282 | ||||||
| WBRNAi00085747 | ||||||
| WBRNAi00101974 | ||||||
| WBRNAi00064628 | ||||||
| WBRNAi00087963 | ||||||
| WBRNAi00087949 | ||||||
| Microarray_results (25) | ||||||
| Brief_identification | Raf homolog serine/threonine-protein kinase | Accession_evidence | UniProt | SP:Q07292 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 28 Nov 2013 00:00:00 | WBPerson4025 | ||||
| Remark | [131015 gw3] Extended the 3' end of this isoform based on the RNASeq data. | Curator_confirmed | WBPerson4025 | |||
| From_analysis | RNASeq_Hillier_elegans | |||||
| Method | curated |
