WormBase Tree Display for CDS: Y51A2D.4
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Y51A2D.4 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y51A2D | |||
Structure | Source_exons | 1 | 12 | |||
638 | 851 | |||||
1405 | 1608 | |||||
2320 | 2567 | |||||
3286 | 3806 | |||||
4334 | 4470 | |||||
5306 | 5655 | |||||
6683 | 6817 | |||||
DB_info | Database | SwissProt | UniProtAcc | Q9XXR3 | ||
UniProt | UniProtAcc | Q9XXR3 | ||||
AlphaFold | entry | Q9XXR3 | ||||
UniProt_GCRP | UniProtAcc | Q9XXR3 | ||||
NCBI_protein | GI_number | GI:3881037 | ||||
TREEFAM | TREEFAM_ID | TF314916 | ||||
Protein_id | CHROMOSOME_V | CAA16400 | 1 | |||
DB_remark | HMIT-1.1 protein; contains similarity to Pfam domain PF00083 (Sugar (and other) transporter); contains similarity to Interpro domains IPR036259 (MFS transporter superfamily), IPR050814 (Myo-inositol Transporter), IPR005828 (Major facilitator, sugar transporter-like), IPR003663 (Sugar/inositol transporter) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00013073 | ||||
Corresponding_transcript | Y51A2D.4.1 | |||||
Corresponding_protein | CE19201 | |||||
Corresponding_PCR_product | cenix:50-b3 | |||||
mv_Y51A2D.4 | ||||||
sjj_Y51A2D.4 | ||||||
Corresponding_oligo_set (17) | ||||||
Matching_cDNA (122) | ||||||
RNAi_result | WBRNAi00057137 | |||||
WBRNAi00097120 | ||||||
WBRNAi00117477 | ||||||
WBRNAi00020873 | ||||||
WBRNAi00037349 | ||||||
Microarray_results (18) | ||||||
Brief_identification | Proton myo-inositol cotransporter hmit-1.1 | Accession_evidence | UniProt | SP:Q9XXR3 | ||
RNASeq_FPKM (74) | ||||||
Remark | Annotated using Pfam | |||||
Method | curated |