WormBase Tree Display for CDS: W09D6.1c
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| W09D6.1c | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | W09D6 | |||
| Structure | Source_exons (12) | |||||
| DB_info | Database | TrEMBL | UniProtAcc | B6VQ94 | ||
| UniProt | UniProtAcc | B6VQ94 | ||||
| AlphaFold | entry | B6VQ94 | ||||
| UniProt_GCRP | UniProtAcc | B6VQ94 | ||||
| NCBI_protein | GI_number | GI:211970492 | ||||
| TREEFAM | TREEFAM_ID | TF354264 | ||||
| Protein_id | CHROMOSOME_III | CAR97856 | 1 | |||
| DB_remark | contains similarity to Pfam domains PF00501 (AMP-binding enzyme), PF13360 (Outer membrane protein assembly factor BamB); contains similarity to Interpro domains IPR052091 (Beta-alanine Activation and Resistance), IPR045851 (AMP-binding enzyme, C-terminal domain superfamily), IPR000873 (AMP-dependent synthetase/ligase domain), IPR002372 (Pyrrolo-quinoline quinone repeat domain), IPR042099 (ANL, N-terminal domain), IPR011047 (Quinoprotein alcohol dehydrogenase-like superfamily), IPR018391 (Pyrrolo-quinoline quinone beta-propeller repeat), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Protein_id_evidence | BP:CBP35887 | ||||
| RP:RP37840 | ||||||
| Visible | Gene | WBGene00012356 | ||||
| Corresponding_transcript | W09D6.1c.1 | |||||
| Corresponding_protein | CE43290 | |||||
| Corresponding_PCR_product | TH:323E6 | |||||
| cenix:323-e6 | ||||||
| mv_W09D6.1 | ||||||
| sjj_W09D6.1 | ||||||
| Corresponding_oligo_set (24) | ||||||
| Matching_cDNA (16) | ||||||
| RNAi_result | WBRNAi00062406 | |||||
| WBRNAi00006229 | ||||||
| WBRNAi00055042 | ||||||
| WBRNAi00019750 | ||||||
| WBRNAi00036405 | ||||||
| Microarray_results (27) | ||||||
| Brief_identification | AMP-dependent synthetase/ligase domain-containing protein | Accession_evidence | UniProt | TR:B6VQ94 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 17 Oct 2008 00:00:00 | WBPerson1983 | ||||
| Remark | [081017 pad] Alternate isoform entered based on good quality splicing and conserved protein homology. This isoform utilises the 3' UTR exons of the other 2 isoforms. | Protein_id_evidence | BP:CBP35887 | |||
| RP:RP37840 | ||||||
| Curator_confirmed | WBPerson1983 | |||||
| Method | curated |
