WormBase Tree Display for CDS: T28A8.5a
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| T28A8.5a | SMap | S_parent | Sequence | T28A8 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 158 | |||
| 207 | 320 | |||||
| 366 | 513 | |||||
| 561 | 782 | |||||
| 832 | 894 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q9XU08 | ||
| UniProt | UniProtAcc | Q9XU08 | ||||
| AlphaFold | entry | Q9XU08 | ||||
| UniProt_GCRP | UniProtAcc | Q9XU08 | ||||
| NCBI_protein | GI_number | GI:269993305 | ||||
| Protein_id | CHROMOSOME_III | CAB07285 | 2 | |||
| DB_remark | contains similarity to Pfam domain PF04435 (Domain of unknown function (DUF545)); contains similarity to Interpro domains IPR006570 (SPK domain), IPR053315 (Peptidase C14A) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson51134 | ||||
| Feature_evidence | WBsf126811 | |||||
| WBsf127342 | ||||||
| From_analysis | RNASeq_splice | |||||
| Visible | Gene | WBGene00012111 | ||||
| Corresponding_transcript | T28A8.5a.1 | |||||
| Corresponding_protein | CE44302 | |||||
| Corresponding_PCR_product | TH:323F5 | |||||
| cenix:323-f5 | ||||||
| mv_T28A8.5 | ||||||
| sjj_T28A8.5 | ||||||
| Corresponding_oligo_set | 179004_at | |||||
| Aff_T28A8.5 | ||||||
| GPL19516_CGZ0037373 | ||||||
| GPL21109_T28A8.5 | ||||||
| GPL3518_CE18976 | ||||||
| GPL8673_T28A8_5P00054 | ||||||
| GPL8673_T28A8_5P00325 | ||||||
| Matching_cDNA | male_Nanopore_Roach_123332 | |||||
| young_adult_Nanopore_Roach_102117 | ||||||
| young_adult_Nanopore_Roach_102944 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_83906 | ||||||
| YA_Nanopore_Li_153759 | Inferred_automatically | transcript_builder.pl | ||||
| CK579852 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00019375 | |||||
| WBRNAi00082455 | ||||||
| WBRNAi00006240 | ||||||
| WBRNAi00054374 | ||||||
| WBRNAi00082650 | ||||||
| Microarray_results | SMD_T28A8.5 | |||||
| 179004_at | ||||||
| Aff_T28A8.5 | ||||||
| GPL19516_CGZ0037373 | ||||||
| GPL21109_T28A8.5 | ||||||
| GPL3518_CE18976 | ||||||
| GPL8673_T28A8_5P00054 | ||||||
| GPL8673_T28A8_5P00325 | ||||||
| Brief_identification | SPK domain-containing protein | Accession_evidence | UniProt | TR:Q9XU08 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 06 Jul 2021 08:21:22 | WBPerson51134 | ||||
| Method | curated |
