WormBase Tree Display for CDS: T23H4.1c
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| T23H4.1c | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T23H4 | |||
| Structure | Source_exons | 1 | 114 | |||
| 158 | 245 | |||||
| 284 | 369 | |||||
| 475 | 725 | |||||
| 774 | 870 | |||||
| 934 | 1140 | |||||
| 1191 | 1367 | |||||
| 1414 | 1537 | |||||
| 1583 | 1675 | |||||
| 2015 | 2151 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | E5QCJ1 | ||
| UniProt | UniProtAcc | E5QCJ1 | ||||
| AlphaFold | entry | E5QCJ1 | ||||
| NCBI_protein | GI_number | GI:313004777 | ||||
| Protein_id | CHROMOSOME_I | CBY25204 | 1 | |||
| DB_remark | INX-20 protein; contains similarity to Pfam domain PF00876 (Innexin); contains similarity to Interpro domain IPR000990 (Innexin) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Feature_evidence | WBsf122536 | ||||
| From_analysis | RNASeq_Hillier_elegans | |||||
| Visible | Gene | WBGene00002142 | ||||
| Corresponding_transcript | T23H4.1c.1 | |||||
| Corresponding_protein | CE45699 | |||||
| Corresponding_PCR_product | cenix:89-a3 | |||||
| mv_T23H4.1 | ||||||
| sjj_T23H4.1 | ||||||
| Corresponding_oligo_set (19) | ||||||
| Matching_cDNA | L1_Nanopore_Roach_25662 | Inferred_automatically | transcript_builder.pl | |||
| L4_Nanopore_Roach_44897 | ||||||
| male_Nanopore_Roach_29526 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_4255 | ||||||
| EM_Nanopore_Li_37946 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_8075 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_31628 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00070743 | |||||
| WBRNAi00004296 | ||||||
| WBRNAi00053991 | ||||||
| WBRNAi00070742 | ||||||
| Microarray_results (22) | ||||||
| Brief_identification | Innexin | Accession_evidence | UniProt | TR:E5QCJ1 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 01 Nov 2010 00:00:00 | WBPerson1983 | ||||
| Remark | [101101 pad] Alternate Isoform defined by RNAseq data. This Isoform has an alternate truncated 5' end when compared to the .1a form. The alternate start is in exon 2 of the other Isoforms. | Curator_confirmed | WBPerson1983 | |||
| Feature_evidence | WBsf122536 | |||||
| From_analysis | RNASeq_Hillier_elegans | |||||
| Method | curated |
