WormBase Tree Display for CDS: AC3.6
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| AC3.6 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | AC3 | |||
| Structure | Source_exons | 1 | 141 | |||
| 189 | 348 | |||||
| 961 | 1469 | |||||
| 1526 | 1693 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q17402 | ||
| UniProt | UniProtAcc | Q17402 | ||||
| AlphaFold | entry | Q17402 | ||||
| UniProt_GCRP | UniProtAcc | Q17402 | ||||
| NCBI_protein | GI_number | GI:3873648 | ||||
| TREEFAM | TREEFAM_ID | TF316414 | ||||
| Protein_id | CHROMOSOME_V | CAA94869 | 1 | |||
| DB_remark | COL-151 protein; contains similarity to Pfam domain PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR050632 (Nematode Cuticular Collagen) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00000724 | ||||
| Corresponding_transcript | AC3.6.1 | |||||
| Corresponding_protein | CE05136 | |||||
| Corresponding_PCR_product | cenix:18-a1 | |||||
| mv_AC3.6 | ||||||
| sjj2_AC3.6 | ||||||
| sjj_AC3.6 | ||||||
| Corresponding_oligo_set (18) | ||||||
| Matching_cDNA | FM251696 | Inferred_automatically | transcript_builder.pl | |||
| yk362c2.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk546g1.5 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00038598 | |||||
| Microarray_results (18) | ||||||
| Brief_identification | Nematode cuticle collagen N-terminal domain-containing protein | Accession_evidence | UniProt | TR:Q17402 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 27 Jun 2017 14:41:25 | WBPerson4025 | ||||
| Remark | [170627 gw3] This CDS has been inspected and looks satisfactory. | Curator_confirmed | WBPerson4025 | |||
| From_analysis | RNASeq | |||||
| Method | curated |
