WormBase Tree Display for CDS: OVOC7902b
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| OVOC7902b | Evidence | From_analysis | RNASeq | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM3_51 | |||
| Structure | Source_exons | 1 | 162 | |||
| 419 | 523 | |||||
| 1376 | 1515 | |||||
| 2575 | 2610 | |||||
| 2813 | 2895 | |||||
| 3108 | 3242 | |||||
| 3457 | 3656 | |||||
| 3878 | 3926 | |||||
| 4138 | 4243 | |||||
| 4461 | 4533 | |||||
| 4947 | 5087 | |||||
| 5233 | 5322 | |||||
| DB_info | DB_remark | contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006028 (Gamma-aminobutyric acid A receptor/Glycine receptor alpha), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Isoform | Curator_confirmed | WBPerson28994 | ||||
| Start_not_found | 1 | |||||
| Visible | Gene | WBGene00244711 | ||||
| Corresponding_transcript | OVOC7902b.1 | |||||
| Corresponding_protein | OVP14746 | |||||
| Brief_identification | Gamma-aminobutyric acid receptor subunit beta homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 1.3e-05 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 3e-06 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 8e-06 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||||
| WBls:0000664 | 1.6e-05 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 6e-06 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Remark | [150721 jl16] Added isoform based on RNASeq. | Curator_confirmed | WBPerson28994 | |||
| Method | curated |
