WormBase Tree Display for CDS: F59H6.8
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| F59H6.8 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F59H6 | |||
| Structure | Source_exons | 1 | 107 | |||
| 152 | 539 | |||||
| 608 | 755 | |||||
| 800 | 969 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q9N5Q1 | ||
| UniProt | UniProtAcc | Q9N5Q1 | ||||
| AlphaFold | entry | Q9N5Q1 | ||||
| UniProt_GCRP | UniProtAcc | Q9N5Q1 | ||||
| NCBI_protein | GI_number | GI:351065311 | ||||
| TREEFAM | TREEFAM_ID | TF315997 | ||||
| Protein_id | CHROMOSOME_II | CCD61288 | 1 | |||
| DB_remark | BATH-21 protein; contains similarity to Pfam domains PF00651 (BTB/POZ domain), PF00917 (MATH domain); contains similarity to Interpro domains IPR052664 (BTB and MATH domain-containing protein), IPR000210 (BTB/POZ domain), IPR008974 (TRAF-like), IPR002083 (MATH/TRAF domain), IPR011333 (SKP1/BTB/POZ domain superfamily) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00019138 | ||||
| Corresponding_transcript | F59H6.8.1 | |||||
| Corresponding_protein | CE20914 | |||||
| Corresponding_PCR_product | cenix:205-h7 | |||||
| mv_F59H6.8 | ||||||
| sjj_F59H6.8 | ||||||
| smd_F59H6.8 | ||||||
| Corresponding_oligo_set (13) | ||||||
| Matching_cDNA | male_Nanopore_Roach_130811 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_90589 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_148911 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG3060|c3_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| FN899088 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF102C9_1 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_316523 | Inferred_automatically | transcript_builder.pl | ||||
| FN893510 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR102C9_1 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00062289 | |||||
| WBRNAi00049250 | ||||||
| WBRNAi00022389 | ||||||
| WBRNAi00033235 | ||||||
| Microarray_results | SMD_F59H6.8 | |||||
| 181836_at | ||||||
| A_12_P111540 | ||||||
| Aff_F59H6.E | ||||||
| GPL14144_F59H6.8_589-648_0.590_102_A | ||||||
| GPL19516_CGZ0025708 | ||||||
| GPL21109_F59H6.8 | ||||||
| GPL3518_CE20914 | ||||||
| GPL8304_CE_WBGene00019138_A | ||||||
| GPL8673_F59H6_8P00092 | ||||||
| GPL8673_F59H6_8P00206 | ||||||
| GPL8673_F59H6_8P00293 | ||||||
| GPL9450_F59H6.8 | ||||||
| cea2.i.13526 | ||||||
| Brief_identification | BTB domain-containing protein | Accession_evidence | UniProt | TR:Q9N5Q1 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
