WormBase Tree Display for CDS: C41G7.1a
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| C41G7.1a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C41G7 | |||
| Structure | Source_exons | 1 | 72 | |||
| 116 | 181 | |||||
| 230 | 470 | |||||
| 518 | 732 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | G5EFQ8 | ||
| UniProt | UniProtAcc | G5EFQ8 | ||||
| AlphaFold | entry | G5EFQ8 | ||||
| NCBI_protein | GI_number | GI:3874905 | ||||
| Protein_id | CHROMOSOME_I | CAB02838 | 1 | |||
| DB_remark | SMN-1 protein; contains similarity to Pfam domains PF20635 (Survival Motor Neuron, YG-box), PF20636 (Survival Motor Neuron, Gemin2-binding domain); contains similarity to Interpro domains IPR040424 (SMN complex subunit Smn1), IPR049481 (Survival Motor Neuron, Gemin2-binding domain), IPR002999 (Tudor domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Isoform | Accession_evidence | NDB | AF156887 | |||
| Inferred_automatically | transcript_builder | |||||
| Visible | Gene | WBGene00004887 | ||||
| Corresponding_transcript | C41G7.1a.1 | |||||
| C41G7.1a.2 | ||||||
| Corresponding_protein | CE08665 | |||||
| Corresponding_PCR_product | cenix:230-a7 | |||||
| mv_AAF00192 | ||||||
| mv_CAB41945 | ||||||
| sjj_C41G7.1 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA (52) | ||||||
| RNAi_result (22) | ||||||
| Microarray_results | SMD_C41G7.1 | |||||
| 192527_s_at | ||||||
| Aff_C41G7.1 | ||||||
| GPL13394_WBGene00004887 | ||||||
| GPL13914_C41G7.1 | ||||||
| GPL14144_C41G7.1b_196-255_0.938_8_C | ||||||
| GPL14144_C41G7.1b_486-545_0.962_2_B | ||||||
| GPL14144_C41G7.1b_543-602_0.962_1_A | ||||||
| GPL3518_CE27843 | ||||||
| GPL8304_CE_WBGene00004887_A | ||||||
| GPL8304_CE_WBGene00004887_C | ||||||
| GPL8673_C41G7_1aP00174 | ||||||
| GPL8673_C41G7_1aP00501 | ||||||
| GPL8673_C41G7_1aP00521 | ||||||
| GPL8673_C41G7_1bP00013 | ||||||
| GPL8673_C41G7_1bP00531 | ||||||
| GPL8673_C41G7_1bP00551 | ||||||
| GPL9450_C41G7.1b | ||||||
| cea2.d.16361 | ||||||
| Brief_identification | Tudor domain-containing protein | Accession_evidence | UniProt | TR:G5EFQ8 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
