WormBase Schema for Model: Sequence
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?Sequence | DNA | UNIQUE | ?DNA | UNIQUE | Int | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | UNIQUE | Canonical_parent | UNIQUE | ?Sequence | XREF | Genomic_non_canonical | |||||||
Genomic_parent | UNIQUE | ?Sequence | XREF | Nongenomic | ||||||||||
AGP_parent | UNIQUE | ?Sequence | XREF | AGP_fragment | ||||||||||
S_child | Gene_child | ?Gene | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | |||||
CDS_child | ?CDS | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | ||||||
Transcript | ?Transcript | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | ||||||
Pseudogene | ?Pseudogene | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | ||||||
Transposon | ?Transposon | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | ||||||
Genomic_non_canonical | ?Sequence | XREF | Canonical_parent | UNIQUE | Int | UNIQUE | Int | #SMap_info | ||||||
Nongenomic | ?Sequence | XREF | Genomic_parent | UNIQUE | Int | UNIQUE | Int | #SMap_info | ||||||
PCR_product | ?PCR_product | XREF | Canonical_parent | UNIQUE | Int | UNIQUE | Int | #SMap_info | ||||||
Operon | ?Operon | XREF | Canonical_parent | UNIQUE | Int | UNIQUE | Int | #SMap_info | ||||||
AGP_fragment | ?Sequence | XREF | AGP_parent | Int | UNIQUE | Int | #SMap_info | |||||||
Allele | ?Variation | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | ||||||
Oligo_set | ?Oligo_set | XREF | Canonical_parent | UNIQUE | Int | UNIQUE | Int | #SMap_info | ||||||
Feature_object | ?Feature | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | ||||||
Feature_data | ?Feature_data | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | ||||||
Homol_data | ?Homol_data | XREF | Sequence | UNIQUE | Int | UNIQUE | Int | #SMap_info | ||||||
Structure | From | Source | UNIQUE | ?Sequence | XREF | Subsequence | ||||||||
Source_exons | Int | UNIQUE | Int | |||||||||||
Subsequence | ?Sequence | XREF | Source | UNIQUE | Int | UNIQUE | Int | |||||||
Overlap_right | UNIQUE | ?Sequence | XREF | Overlap_left | UNIQUE | Int | ||||||||
Overlap_left | UNIQUE | ?Sequence | XREF | Overlap_right | ||||||||||
Gap_right | UNIQUE | Int | Text | |||||||||||
Clone_left_end | ?Clone | XREF | Clone_left_end | UNIQUE | Int | |||||||||
Clone_right_end | ?Clone | XREF | Clone_right_end | UNIQUE | Int | |||||||||
Flipped | ||||||||||||||
DB_info | Database | ?Database | ?Database_field | ?Text | ||||||||||
Protein_id | ?Sequence | UNIQUE | Text | UNIQUE | Int | |||||||||
Secondary_accession | ?Text | |||||||||||||
DB_remark | ?Text | #Evidence | ||||||||||||
Keyword | ?Keyword | |||||||||||||
DB_annotation | ?Database | UNIQUE | ?LongText | |||||||||||
EMBL_dump_info | #EMBL_dump_info | |||||||||||||
Origin | From_database | UNIQUE | ?Database | UNIQUE | Int | |||||||||
From_author | ?Author | XREF | Sequence | |||||||||||
From_laboratory | UNIQUE | ?Laboratory | ||||||||||||
Genetic_code | UNIQUE | ?Genetic_code | ||||||||||||
Date | DateType | Text | ||||||||||||
Date_directory | UNIQUE | Text | ||||||||||||
Life_stage | UNIQUE | ?Life_stage | ||||||||||||
Species | UNIQUE | ?Species | ||||||||||||
Library | UNIQUE | ?Library | ||||||||||||
Strain | UNIQUE | ?Strain | ||||||||||||
Anatomy_term | ?Anatomy_term | |||||||||||||
Analysis | UNIQUE | ?Analysis | ||||||||||||
Read_coverage | UNIQUE | Float | ||||||||||||
Visible | Title | UNIQUE | ?Text | |||||||||||
Matching_CDS | ?CDS | XREF | Matching_cDNA | #Evidence | ||||||||||
Matching_transcript | ?Transcript | XREF | Matching_cDNA | #Evidence | ||||||||||
Matching_pseudogene | ?Pseudogene | XREF | Matching_cDNA | #Evidence | ||||||||||
Clone | ?Clone | XREF | Sequence | |||||||||||
Clone_end_seq_read | ?Clone | XREF | End_sequence | |||||||||||
GO_term | ?GO_term | XREF | Sequence | ?GO_code | #Evidence | |||||||||
Gene | ?Gene | XREF | Other_sequence | |||||||||||
Paired_read | ?Sequence | XREF | Paired_read | |||||||||||
Reference | ?Paper | XREF | Sequence | |||||||||||
Expr_pattern | ?Expr_pattern | XREF | Sequence | |||||||||||
Interaction | ?Interaction | |||||||||||||
RNAi | ?RNAi | XREF | Sequence | |||||||||||
Confidential_remark | ?Text | |||||||||||||
Remark | ?Text | #Evidence | ||||||||||||
Properties | Genomic_canonical | Gene_count | UNIQUE | Int | ||||||||||
Briggsae_canonical | ||||||||||||||
Genomic | ||||||||||||||
Checksum | MD5 | UNIQUE | Text | |||||||||||
CRC64 | UNIQUE | Text | ||||||||||||
cDNA | cDNA_EST | |||||||||||||
EST_5 | ||||||||||||||
EST_3 | ||||||||||||||
Capped_5 | ||||||||||||||
TSL_tag | ||||||||||||||
EST_consensus | ||||||||||||||
RNA | UNIQUE | mRNA | UNIQUE | Processed_mRNA | ||||||||||
Unprocessed_mRNA | ||||||||||||||
tRNA | Type | UNIQUE | Text | |||||||||||
Anticodon | UNIQUE | Text | ||||||||||||
rRNA | UNIQUE | Text | ||||||||||||
snRNA | UNIQUE | Text | ||||||||||||
snoRNA | UNIQUE | Text | ||||||||||||
scRNA | UNIQUE | Text | ||||||||||||
miRNA | UNIQUE | Text | ||||||||||||
ncRNA | UNIQUE | Text | ||||||||||||
Ignore | #Evidence | |||||||||||||
Show_in_reverse_orientation | ||||||||||||||
Status | Received | UNIQUE | DateType | |||||||||||
Library_construction | UNIQUE | DateType | ||||||||||||
Shotgun | UNIQUE | DateType | ||||||||||||
Shotgun_complete | UNIQUE | DateType | ||||||||||||
Contiguous | UNIQUE | DateType | ||||||||||||
Finished | UNIQUE | DateType | ||||||||||||
Submitted | UNIQUE | DateType | ||||||||||||
Annotated | UNIQUE | DateType | ||||||||||||
Archived | UNIQUE | DateType | UNIQUE | Text | ||||||||||
Match_type | UNIQUE | Match_with_function | ||||||||||||
Match_without_function | ||||||||||||||
Link | ||||||||||||||
Splices | Confirmed_intron | Int | Int | #Splice_confirmation | ||||||||||
Predicted_5 | ?Method | Int | Int | UNIQUE | Float | |||||||||
Predicted_3 | ?Method | Int | Int | UNIQUE | Float | |||||||||
Cluster_information | Contains_reads | ?Sequence | XREF | Contained_in_cluster | ||||||||||
Contained_in_cluster | ?Sequence | XREF | Contains_reads | |||||||||||
Map | ?Map | XREF | Sequence | #Map_position | ||||||||||
Interpolated_map_position | UNIQUE | ?Map | UNIQUE | Float | ||||||||||
Oligo | ?Oligo | XREF | In_sequence | Int | UNIQUE | Int | ?Method | |||||||
Defines_feature | ?Feature | XREF | Defined_by_sequence | #Evidence | ||||||||||
Assembly_tags | Text | Int | Int | Text | ||||||||||
Homol | DNA_homol | ?Sequence | XREF | DNA_homol | ?Method | Float | Int | UNIQUE | Int | Int | UNIQUE | Int | #Homol_info | |
Pep_homol | ?Protein | XREF | DNA_homol | ?Method | Float | Int | UNIQUE | Int | Int | UNIQUE | Int | #Homol_info | ||
Motif_homol | ?Motif | XREF | DNA_homol | ?Method | Float | Int | UNIQUE | Int | Int | UNIQUE | Int | #Homol_info | ||
Homol_homol | ?Homol_data | XREF | DNA_homol | ?Method | Float | Int | UNIQUE | Int | Int | UNIQUE | Int | #Homol_info | ||
Method | UNIQUE | ?Method |